Exactly how fast is PatternHunter when comparing two DNA
sequences?



Exactly how fast is PatternHunter when comparing two DNA sequences? ..

Answer / guest

PatternHunter was used to compare the Human Genome (3
Gbase) against 16 million reads of the Mouse Genome (3
coverage, 9 Gbase total). It took only 21 days using a
Pentium 3/700 MHz desktop computer with 1G of RAM. On the
same machine and at the same sensitivity, Blast would take
years.

Is This Answer Correct ?    0 Yes 0 No

Post New Answer

More Bio Informatics Interview Questions

How to align two sequences?

1 Answers  


How can you have an accession number?

1 Answers  


How do you customise database for blast?

1 Answers  


Which of the following parameters is the same for molecules of all gases at a given temperature? (a) Mass (b) Momentum (c) Speed (d) Kinetic energy.

1 Answers   IBM, SIR, Wipro,


Define COG and KOG ?

1 Answers  






How do you customize database for blast?

0 Answers  


Explain Homology modelling?

1 Answers  


If the sum of n terms of two series of A.P are in the ratio 5n+4:9n+6 .find the ratio of their 13th terms

3 Answers   Deloitte, IIT, Wipro,


Explain microarray data clustering ?

1 Answers  


What is a scoring matrix?

1 Answers  


How to Draw a 3D structure of a Protein from its amino acid sequece?

1 Answers  


What is bioinformatics?

2 Answers  


Categories