How to predict the structure of a sequence?




Answers were Sorted based on User's Feedback



How to predict the structure of a sequence?..

Answer / guest

1. Retrieve the target sequence from NCBI.
2. Perform BLAST program with pdb database and obtain
homologous sequences
3. Retrieve the template structure from the PDB for the
hypothetical protein resulted from BLAST for target
sequence
4. using swiss-pdb align both the target and template
sequences
5. in the swiss-pdb page , using three modes of alignment
align and fit the sequences

Is This Answer Correct ?    2 Yes 0 No

How to predict the structure of a sequence?..

Answer / guest

1. Retrieve the target sequence from NCBI.
2. Perform BLAST program with pdb database and obtain
homologous sequences
3. Retrieve the template structure from the PDB for the
hypothetical protein resulted from BLAST for target
sequence
4. using swiss-pdb align both the target and template
sequences
5. in the swiss-pdb page , using three modes of alignment
align and fit the sequences

Is This Answer Correct ?    1 Yes 0 No

Post New Answer




More Bio Informatics Interview Questions

What is a ?clean and run? reaction?

1 Answers  


How much template do you need for sequencing?

1 Answers  


An electron is injected into a region of uniform magnetic flux density with the components of velocity parallel to and normal to the flux. What is the path of the electron?

0 Answers   Wipro,


What are the current challenges in the Pharmaceutical and biotechnology sectors?

0 Answers  


What is Phantom Gene Sequence?

0 Answers  






What is an alignment?

2 Answers  


What is bioinformatics?

2 Answers  


it is a common experience that if we go on burping simultaneously and consciously(i.e.purposely,as in a non- natural action),our stomach starts aching.Why does this happen?

1 Answers  


How to find a sequence of dna molecule?

0 Answers  


what is an active ? (UML)

0 Answers  


How do you find repeats within one DNA sequence?

1 Answers  


Integrate 3x + 5 / (x3-x2-x+1)?

3 Answers   Google,






Categories