Exactly how fast is PatternHunter when comparing two DNA
sequences?
- 1 Answers
- 3733 Views
- I also Faced
- E-Mail Answers
Answer Posted / guest
PatternHunter was used to compare the Human Genome (3
Gbase) against 16 million reads of the Mouse Genome (3
coverage, 9 Gbase total). It took only 21 days using a
Pentium 3/700 MHz desktop computer with 1G of RAM. On the
same machine and at the same sensitivity, Blast would take
years.
| Is This Answer Correct ? | 0 Yes | 0 No |
Post New Answer View All Answers
NLO : RPS : : ? : ZXA
Explain about needleman-wunsch algorithm?
What is a homologue?
What are the main differences between parsimony,distance and likelihood-based algorithms?
What do you think are the more interesting areas of bioinformatics?
Does multidrug resistance (mdr) arise by activation of stable genes encoding drug efflux pumps or by mutations of genes encoding other types of transporters in bacterial pathogens?
What are the limitations of blotting techniques?
How long will a train 100m long traveling at 72kmph take to overtake another train 200m long traveling at 54kmph?
Did integral membrane transport proteins arise as an independent protein class or from other types of proteins?
Did shuffling of protein constituents occur between systems for multicomponent transport systems such as the atp-binding-cassette or complex protein secretion systems?
What is the idea behind ?weighting? sequences in the package CLUSTAL W for multiple alignment? How are these weights calculated?
What is protein sequencing?
Draw the E-R diagram for the database of a departmental store having the following relational database scheme Employees(e-no, address) Department(d-name) work-n(e-no, d-name) Looking-after(d-name, e-no) Item (item-no, brand-name, model-no, cost-price, sale-price)
Describe the aim of microarray data analysis?
What is the criteria for LTQ (LC-MS/MS) SEQUEST search?
