There are different way to deploy the web application in 
web server like
1- X Copy deployment
2- create setup package and install the server machine
3- use the deployment tools and configure the server 
repositery and drag and drop all files in your machine to 
virtul folder of server machine,

if you really want to d that so just sit in front of system 
and say..."INSTALL" . it will automatically install on your 
system..no matter either web or window.

create new vertual directory 
create new webside in directory
give the path for webside 
set port and security